Publications

Journal Articles

• Deep Learning as Phase Retrieval Tool for CARS Spectra
  R. Houhou, P. Barman, M. Schmitt, T. Meyer, J. Popp, T. Bocklitz
  Optics Express, 28(14), 21002–21024 (2020) DOI

• Comparison of Denoising Tools for the Reconstruction of Nonlinear Multimodal Images R. Houhou, E. Quansah, T. Meyer-Zedler, M. Schmitt, F. Hoffmann, O. Guntinas-Lichius, J. Popp, T. Bocklitz
  Biomedical Optics Express, 14(7), 3259–3278 (2023) DOI

• Comparison of Functional and Discrete Data Analysis Regimes for Raman Spectra
  R. Houhou, P. Rösch, J. Popp, T. Bocklitz
  Analytical and Bioanalytical Chemistry, 413(22), 5633–5644 (2021) DOI

• Review of Fluorescence Lifetime Imaging Microscopy (FLIM) Data Analysis using Machine Learning
  M. Adhikari, R. Houhou, J. Hniopek, T. Bocklitz
  Journal of Experimental and Theoretical Analyses, 1(1), 44-63 (2023) DOI

• Bolstering Fitness via CO₂ Fixation and Organic Carbon Uptake: Mixotrophs in Modern Groundwater
  M. Taubert, W. A. Overholt, B. M. Heinze, G. A. Matanfack, R. Houhou, N. Jehmilch, M. von Bergen, P. Rösch, J. Popp, K. Küsel
  The ISME Journal, 16(4), 1153-1162 (2022) DOI

• Trends in Artificial Intelligence, Machine Learning, and Chemometrics Applied to Chemical Data
  R. Houhou, T. Bocklitz
  Analytical Science Advances, 2(3–4), 128-141 (2021) DOI

• Influence of Carbon Sources on Quantification of Deuterium Incorporation in Heterotrophic Bacteria: a Raman-Stable Isotope Labeling Approach
  G. Matanfack, M. Taubert, S. Guo, R. Houhou, T. Bocklitz, K. Küsel, P. Rösch, J. Popp
  Analytical Chemistry, 92(16), 11429–11437 (2020) DOI

• Drought or Humidity Oscillations? The Case of Coastal Zone of Lebanon
  A. Shaban, R. Houhou
  Journal of Hydrology, 529, 1768–1775 (2015) DOI

Conference Papers

• Confidence Intervals Uncovered: Are we ready for real-world medical imaging AI?
  E. Christodoulou, A. Reinke, R. Houhou, et al.
  Medical Image Computing and Computer Assisted Intervention (MICCAI 2024),
  Lecture Notes in Computer Science, vol. 15010 (2024) DOI

Theses

• PhD Thesis — Inverse and Forward Modeling Tools for Biophotonic Data
  Dr. Rola Houhou
  Friedrich Schiller University Jena, Germany
  2022
  Repository: Thüringen University Library
  PDF: Repository PDF

Book Chapters

• Photonic Data Science for Raman Data Analysis
  R. Houhou, T. Bocklitz
  In: Raman Spectroscopy in Human Health and Biomedicine, 2024 DOI

• Chemometrics in Raman Spectroscopy
  S. Guo, O. Ryabchykov, N. Ali, R. Houhou, T. Bocklitz In: Comprehensive Chemometrics: Chemical and Biochemical Data Analysis, 2020 DOI

Preprints

• Sulfur-fueled chemolithoautotrophs replenish organic carbon inventory in groundwater
  M. Taubert, B. M. Heinze, W. A. Overholt, G. Azemtsop, R. Houhou, N. jehmlich, M. von Bergen, P. Rösch, J. Popp, K. Küsel
  bioRxiv (2021) DOI

Talks & Teaching

From Single Models to AI Teams: Collaboration in Multi-Agent Systems
Conceptual lecture introducing AI agents, multi-agent architectures, coordination strategies, role specialization, and distributed intelligence in complex systems.
Format: lecture slides (PDF)
Year: 2025
Audience: Graduate-level Students
Slides (PDF)